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Training: Intel Array Building Blocks (ArBB)
by LRZ aktuell April 13, 2011

April 13, 2011

Dear Users, LRZ offers a training on Array Building Blocks (ArBB), Intel's latest solution for high-level parallel programming. The training takes place at the LRZ building on May 11/12, 2011 and is free of charge. ArBB allows application developers to concentrate on the implementation of their scientific code instead of dealing with low-level issues like extracting parallelisms or optimizing performance for a certain hardware architecture. It allows to produce scalable and portable parallel implementations from a single high-level, maintainable, and application-oriented implementation. LRZ has evaluated ArBB (as successor of RapidMind) for more than 6 months. Since evaluation results are convincing, we would like to welcome you to learn more about this new programming language based on C++. Hans Pabst, Software Engineer and Technical Consultant at Intel, will explain the philosophy of ArBB, introduce the syntax and key features like ArBB data collections or its operators for data processing. The lectures are complemented by hands-on parts which will allow people to gain practical experience with the programming model and performance analysis of ArBB code with VTune. Participants are invited to continue the practical parts with own pieces of code. The tutorial will also give an overview of the different technologies and parallel programming models supported by Intel products, and how to mix and match these products. More information on the course can be found at http://www.lrz.de/ services/compute/courses/#TOC1.19 . Please register via the LRZ registration form (select course HIAB1S11). Diese Information finden Sie im WWW unter http://www.lrz-muenchen.de/services/compute/hlrb/aktuell/ali3990/ Iris Christadler

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Betriebsunterbrechung Exchange heute (12.04.) um 17 Uhr wegen dringender Wartung
by LRZ aktuell April 12, 2011

April 12, 2011

Wegen dringender Wartungsarbeiten (Austausch defekter Hardware) muss der Exchange-Betrieb heute (12.04.) gegen 17 Uhr fuer ca. 15 bis 30 Minuten unterbrochen werden. Wir bitten um Ihr Verstaendnis. Diese Information finden Sie im WWW unter http://www.lrz-muenchen.de/aktuell/ali3989/ Ado Haarer

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PRACE-1IP newsletter
by LRZ aktuell April 11, 2011

April 11, 2011

The third issue of the PRACE-1IP newsletter is published. Content: * Solving the mysteries of swine flu, epileptic seizure and other diseases with PRACE resources * PRACE Scientific Seminar HPC Boosts Science covered HPC requirements in multiple disciplines * News from CURIE * PRACE Summer School: Taking the most out of supercomputers * Second EU/US Summer School on HPC Challenges in Computational Sciences Link to the newsletter: http://www.prace-project.eu/documents/prace_1ip_nl_3.pdf The PRACE newsletter is published four times per year. Diese Information finden Sie im WWW unter http://www.lrz-muenchen.de/aktuell/ali3988/ Ludger Palm

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Upd:Update: HLRB-II login partition back in production
by LRZ aktuell April 11, 2011

April 11, 2011

Changes to this message: Update Dear users of HLRB-II, the problems on the login partition of HLRB-II have been fixed and it is back in production. We apologize for the inconvenience caused by this interrupt. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/hlrb/aktuell/ali3985/ Hans-Georg Kleinhenz

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Netzbetrieb: Netzwartung am 12.04.2011
by LRZ aktuell April 11, 2011

April 11, 2011

Am 12.04.2011 werden folgende Wartungsarbeiten durchgefuehrt: Was : Software Update am Router csr1-kw5 (Campus Garching) Wo : Gesamter Campus Garching Wann: 7:30 Uhr fuer ca. 5-10 Minuten. Alle Verbindungen werden unterbrochen. Was : Patch-Arbeiten an Gebaeude Switches Wo : TUM Garching Geb. 5107 Wann: Zwischen 8:00 - 9:00 Uhr, jeweils pro Port kurze Unterbrechung Was : Reboot der Gebaeude Switches Wo : Garching, LMU Phyisik Geb. 5109, Am Coulombwall 1 Wann: Zwischen 8:00 - 8:15 Uhr Diese Information finden Sie im WWW unter http://www.lrz-muenchen.de/services/netz/aktuell/ali3987/ Helmut Troebs

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Netzbetrieb: SLB, iRule server2server wird konsolidiert
by LRZ aktuell April 11, 2011

April 11, 2011

Am Dienstag, 12.04.2011 wird zwischen 8:00 Uhr - 9:00 Uhr die iRule "server2server" konsolidiert. Diese iRule ist fuer die Verbindung von Servern hinter den SLBs zu anderen Servern hinter den SLBs zustaendig. Die Arbeiten sollten zu keinen Ausfaellen fuehren. Wer trotzdem Probleme bemerkt moege sich beim SLB-Team melden. Diese Information finden Sie im WWW unter http://www.lrz-muenchen.de/services/netzdienste/aktuell/ali3986/ Helmut Troebs

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HLRB-II login partition down
by LRZ aktuell April 11, 2011

April 11, 2011

Dear users of HLRB-II, the login partition of HLRB-II is currently down. SGI support has been notified. To access your data or to submit jobs please use the alternate login node login2.hlrb2.lrz-muenchen.de We apologize for the inconvenience caused by this interrupt. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/hlrb/aktuell/ali3985/ Hans-Georg Kleinhenz

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Upd:Preparing for the HLRB-II successor SuperMUC
by LRZ aktuell April 6, 2011

April 6, 2011

Changes to this message: Update Dear users of HLRB II at LRZ, After more than 5 years of operation, the presently deployed Altix 4700 system is approaching the end of its lifetime. It is presently intended to retire the Altix 4700 system from user operation toward the end of October 2011. Therefore, we hereby inform you what steps will be taken by LRZ to move its supercomputing operations to the next-generation infrastructure, which will be delivered by IBM, and will be based on standard x86-64 processors with an Infiniband-based fat tree interconnect. LRZ intends to incrementally move production to the new system throughout summer and autumn of 2011. * Early in August 2011, a migration system containing 205 nodes, each containing 40 Westmere-EX cores and 160 GBytes of shared memory, will be made available to selected HLRB II users to enable porting and tuning of programs. Then, until end of August 2011, the system will be made generally available to all users. * Migration of the LRZ software stack will start in July 2011, and may take until September to be completed. The development environment will be based on Intel's compilers (version 12.0), and an MPI implementation delivered by IBM. Pure OpenMP programs can only be run with up to 40 threads. * With a peak performance of 78 TFlop/s, the above-mentioned system will be able to take over the job load from the Altix 4700, while only needing 25% of the electrical energy compared to HLRB II. * IBM's LoadLeveler will be deployed as a batch queuing system; therefore you will need to make changes to your existing PBS job scripts. * During the intermediate operation phase (from August 2011 to summer 2012), the I/O bandwidth to the scratch disk and project subsystem will be lower than presently available on the Altix, and programs making use of parallel I/O via MPI-IO or HDF5 will require special configuration. * In late summer or early autumn 2011, LRZ - in collaboration with Intel and IBM - is planning a training workshop on handling the system and its development environment, to which all users of the HLRB II will be invited. * In summer 2012, the much bigger system (SuperMUC) with more than 6250 nodes (each with 16 Sandy Bridge-EP cores and 32 GBytes of memory) will become available for user operation. SuperMUC will have a peak performance of 3 PetaFlop/s (3,000 TFlop/s) which is roughly 50 times more than the present system. To fully exploit the capabilities of the new SIMD (AVX) units on the Sandy Bridge CPUs, further tuning measures may be appropriate, but programs compiled for the Westmere-based migration system should run without problems. * The system will also provide GPFS ("General Parallel File System") based disk storage with a total capacity of 10,000 TBytes and an aggregate bandwidth of 200 GBytes/s, which will fully support MPI-IO and HDF5-based parallel I/O. Furthermore, SuperMUC will have provisions in place to run jobs in an energy efficient manner e.g., by running processors at a lower frequency if the program's performance does not deteriorate. * Some months after SuperMUC's start of user operation, the nodes of the migration system will be integrated with the main system; forming a "fat node" island for programs which require a large shared memory. We expect that, due to security considerations, some policies on system usage (especially how to access the system) may change. We will keep you informed about these changes through the documentation of the new system once details have been determined. We wish all of you the best possible success for your scientific simulation endeavor on our new Petaflop class successor to HLRB II. If you have further questions, please forward them to us via the LRZ Servicedesk. Some additional information is also available via http://www.lrz.de/ services/compute/supermuc/01_supermuc_desc/. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/hlrb/aktuell/ali3984/ Reinhold Bader

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Upd:Preparing for the HLRB-II successor SuperMUC
by LRZ aktuell April 6, 2011

April 6, 2011

Changes to this message: Update Dear users of HLRB II at LRZ, After more than 5 years of operation, the presently deployed Altix 4700 system is approaching the end of its lifetime. It is presently intended to retire the Altix 4700 system from user operation toward the end of October 2011. Therefore, we hereby inform you what steps will be taken by LRZ to move its supercomputing operations to the next-generation infrastructure, which will be delivered by IBM, and will be based on standard x86-64 processors with an Infiniband-based fat tree interconnect. LRZ intends to incrementally move production to the new system throughout summer and autumn of 2011. * Early in August 2011, a migration system containing 205 nodes, each containing 40 Westmere-EX cores and 160 GBytes of shared memory, will be made available to selected HLRB II users to enable porting and tuning of programs. Then, until end of August 2011, the system will be made generally available to all users. * Migration of the LRZ software stack will start in July 2011, and may take until September to be completed. The development environment will be based on Intel's compilers (version 12.0), and an MPI implementation delivered by IBM. Pure OpenMP programs can only be run with up to 40 threads. * With a peak performance of 78 TFlop/s, the above-mentioned system will be able to take over the job load from the Altix 4700, while only needing 25% of the electrical energy compared to HLRB II. * IBM's LoadLeveler will be deployed as a batch queuing system; therefore you will need to make changes to your existing PBS job scripts. * During the intermediate operation phase (from August 2011 to summer 2012), the I/O bandwidth to the scratch disk and project subsystem will be lower than presently available on the Altix, and programs making use of parallel I/O via MPI-IO or HDF5 will require special configuration. * In late summer or early autumn 2011, LRZ - in collaboration with Intel and IBM - is planning a training workshop on handling the system and its development environment, to which all users of the HLRB II will be invited. * In summer 2012, the much bigger system (SuperMUC) with more than 6250 nodes (each with 16 Sandy Bridge-EP cores and 32 GBytes of memory) will become available for user operation. SuperMUC will have a peak performance of 3 PetaFlop/s (3,000 TFlop/s) which is roughly 50 times more than the present system. To fully exploit the capabilities of the new SIMD (AVX) units on the Sandy Bridge CPUs, further tuning measures may be appropriate, but programs compiled for the Westmere-based migration system should run without problems. * The system will also provide GPFS ("General Parallel File System") based disk storage with a total capacity of 10,000 TBytes and an aggregate bandwidth of 200 GBytes/s, which will fully support MPI-IO and HDF5-based parallel I/O. Furthermore, SuperMUC will have provisions in place to run jobs in an energy efficient manner e.g., by running processors at a lower frequency if the program's performance does not deteriorate. * Some months after SuperMUC's start of user operation, the nodes of the migration system will be integrated with the main system; forming a "fat node" island for programs which require a large shared memory. We expect that, due to security considerations, some policies on system usage (especially how to access the system) may change. We will keep you informed about these changes through the documentation of the new system once details have been determined. We wish all of you the best possible success for your scientific simulation endeavor on our new Petaflop class successor to HLRB II. If you have further questions, please forward them to us via the LRZ Servicedesk (https://servicedesk.lrz.de/?service= Hochleistungsrechnen%20und%20Grid-Supercomputing%20(HLRB)&lang=en). Some additional information is also available via http://www.lrz.de/ services/compute/supermuc/01_supermuc_desc/. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/hlrb/aktuell/ali3984/ Reinhold Bader

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Preparing for the HLRB-II successor SuperMUC
by LRZ aktuell April 6, 2011

April 6, 2011

Dear users of HLRB II at LRZ, After more than 5 years of operation, the presently deployed Altix 4700 system is approaching the end of its lifetime. It is presently intended to retire the Altix 4700 system from user operation toward the end of October 2011. Therefore, we hereby inform you what steps will be taken by LRZ to move its supercomputing operations to the next-generation infrastructure, which will be delivered by IBM, and will be based on standard x86-64 processors with an Infiniband-based fat tree interconnect. LRZ intends to incrementally move production to the new system throughout summer and autumn of 2011. * Early in August 2011, a migration system containing 205 nodes, each containing 40 Westmere-EX cores and 160 GBytes of shared memory, will be made available to selected HLRB II users to enable porting and tuning of programs. Then, until end of August 2011, the system will be made generally available to all users. * Migration of the LRZ software stack will start in July 2011, and may take until September to be completed. The development environment will be based on Intel's compilers (version 12.0), and an MPI implementation delivered by IBM. Pure OpenMP programs can only be run with up to 40 threads. * With a peak performance of 78 TFlop/s, the above-mentioned system will be able to take over the job load from the Altix 4700, while only needing 25% of the electrical energy compared to HLRB II. * IBM's LoadLeveler will be deployed as a batch queuing system; therefore you will need to make changes to your existing PBS job scripts. * During the intermediate operation phase (from August 2011 to summer 2012), the I/O bandwidth to the scratch disk and project subsystem will be lower than presently available on the Altix, and programs making use of parallel I/O via MPI-IO or HDF5 will require special configuration, e.g. us a specific filesystem. * In late summer or early autumn 2011, LRZ - in collaboration with Intel and IBM - is planning a training workshop on handling the system and its development environment, to which all users of the HLRB II will be invited. * In summer 2012, the much bigger system (SuperMUC) with more than 6250 nodes (each with 16 Sandy Bridge-EP cores and 32 GBytes of memory) will become available for user operation. SuperMUC will have a peak performance of 3 PetaFlop/s (3,000 TFlop/s) which is roughly 50 times more than the present system. To fully exploit the capabilities of the new SIMD (AVX) units on the Sandy Bridge CPUs, further tuning measures may be appropriate, but programs compiled for the Westmere-based migration system should run without problems. * The system will also provide GPFS ("General Parallel File System") based disk storage with a total capacity of 10,000 TBytes and an aggregate bandwidth of 200 GBytes/s, which will fully support MPI-IO and HDF5-based parallel I/O. Furthermore, SuperMUC will have provisions in place to run jobs in an energy efficient manner e.g., by running processors at a lower frequency if the program's performance does not deteriorate. * Some months after SuperMUC's start of user operation, the nodes of the migration system will be integrated with the main system; forming a "fat node" island for programs which require a large shared memory. We expect that, due to security considerations, some policies on system usage (especially how to access the system) may change. We will keep you informed about these changes through the documentation of the new system once details have been determined. We wish all of you the best possible success for your scientific simulation endeavor on our new Petaflop class successor to HLRB II. If you have further questions, please forward them to us via the LRZ Servicedesk (https://servicedesk.lrz.de/?service= Hochleistungsrechnen%20und%20Grid-Supercomputing%20(HLRB)&lang=en) Some additional information is also available via http://www.lrz.de/ services/compute/supermuc/01_supermuc_desc/. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/hlrb/aktuell/ali3984/ Reinhold Bader

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