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Upd:Linux Cluster: UV returned to operation
by LRZ aktuell Feb. 8, 2013

Feb. 8, 2013

Changes to this message: Update Update (Feb 8, 15:00): The Ultraviolet systems hav been returned to user operation. Please see below what you need to do as a consequence of the configuration changes. ----------------------------------------------------------------------- Recent configuration changes: * The default MPI environment on the MPP cluster was changed from Parastation MPI to Intel MPI. However, the mpi.parastation module will remain available for legacy use until the end of 2013. On the sgi ICE and UV systems, the sgi MPI (mpi.mpt) will remain default. We strongly recommend that you recompile your applications with Intel MPI. If you insist on still running Parastation MPI binaries, you need to add the following lines to your SLURM job scripts: module unload mpi.intel module load mpi.parastation/5.0/intel * The 8-way Myrinet Cluster has been retired from parallel processing, and the nodes were added to the serial processing pool. This implies that the partition "myri_std" in the SLURM cell "myri" is now unavailable. * For the serial queues, SLURM fair share scheduling was introduced. For the parallel queues, a combination of fair share scheduling and favoring large jobs is now active. This is to prevent a single user from monopolizing cluster segments for long times if there are many jobs in the queue. * New storage systems have been introduced for the WORK (==PROJECT) and SCRATCH file systems. Please note that LRZ has only migrated WORK data to the new file system; data in SCRATCH have not been migrated. However the old SCRATCH file system will remain available as a separate mount in read-only mode on the login nodes until the end of March, 2013. Migration of data can then be done via commands like cd $SCRATCH_LEGACY cp -a <my_scratch_subdirectory> $SCRATCH The environment variable $SCRATCH_LEGACY will remain defined and point to the legacy scratch area until end of March, 2013. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/aktuell/ali4501/ Reinhold Bader

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SuperMUC: Hardware maintenance on Feb 13 and 14
by LRZ aktuell Feb. 7, 2013

Feb. 7, 2013

Dear users of the SuperMUC Petaflop system at LRZ, As the next step in improvement of the stability of operation (please also see issue 3 in http://www.lrz.de/services/compute/supermuc/ aktuell/ali4512/), a hardware maintenance on the disk subsystems has been scheduled for February 13-14, 2013. This implies that user operation will be suspended on Feb. 13 at 8:00 am. We ask for your understanding for this rather short interval after the last (and rather long) maintenance, but feel that solving the above issue is of high priority in order to further improve the operational stability of SuperMUC. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/supermuc/aktuell/ali4520/ Matthias Brehm

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Wartung Internetzugang 7.2. (morgen) 6-7 Uhr
by LRZ aktuell Feb. 6, 2013

Feb. 6, 2013

Der DFN hat wegen eines kritischen Fehlers eine kurzfristige Wartung des X-WiN-Routers in Garching zwischen 6:00 Uhr und 7:00 Uhr angekuendigt. Beim Umschalten auf die Backupanbindung sind kurzzeitige Stoerungen bei der Internetanbindung moeglich. WartungsNummer: 3102-56 Wartungsfenster: 07.02.2013 06:00 - 07.02.2013 07:00 (UTC 07.02.2013 05:00 - UTC 07.02.2013 06:00) Dauer: 5 Minuten Ausloeser: NOC Grund: Router Neustart wg IOS Bug Wartung an: Geraet xr-gar1 Betroffen: Leitung GE10/ANWD_KA0783_GAR_0LRZM Betroffen: Leitung GE10/ANWD_KA1775_GAR_0LRZM Betroffen: DFNInternet-Dienst Mitnutzung Nummer D491 Diese Information finden Sie im WWW unter http://www.lrz-muenchen.de/services/netz/aktuell/ali4519/ Wolfgang Beyer

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Upd:Linux Cluster: UV still unavailable, MPP returned to operation
by LRZ aktuell Feb. 6, 2013

Feb. 6, 2013

Changes to this message: MPP returned to user operation Update (Feb 6, 13:00): The MPP cluster has been returned to user operation. Please see below what you need to do as a consequence of the configuration changes. Dear users of the Linux Cluster systems at LRZ, unfortunately the Ultraviolet systems are presently unavailable for user operation, because a defective NUMAlink component needs replacement. We'll keep you updated about the status, and of course are working toward a speedy return to user operation. Apologies for the disruption of services. ----------------------------------------------------------------------- Recent configuration changes: * The default MPI environment on the MPP cluster was changed from Parastation MPI to Intel MPI. However, the mpi.parastation module will remain available for legacy use until the end of 2013. On the sgi ICE and UV systems, the sgi MPI (mpi.mpt) will remain default. We strongly recommend that you recompile your applications with Intel MPI. If you insist on still running Parastation MPI binaries, you need to add the following lines to your SLURM job scripts: module unload mpi.intel module load mpi.parastation/5.0/intel * The 8-way Myrinet Cluster has been retired from parallel processing, and the nodes were added to the serial processing pool. This implies that the partition "myri_std" in the SLURM cell "myri" is now unavailable. * For the serial queues, SLURM fair share scheduling was introduced. For the parallel queues, a combination of fair share scheduling and favoring large jobs is now active. This is to prevent a single user from monopolizing cluster segments for long times if there are many jobs in the queue. * New storage systems have been introduced for the WORK (==PROJECT) and SCRATCH file systems. Please note that LRZ has only migrated WORK data to the new file system; data in SCRATCH have not been migrated. However the old SCRATCH file system will remain available as a separate mount in read-only mode on the login nodes until the end of March, 2013. Migration of data can then be done via commands like cd $SCRATCH_LEGACY cp -a <my_scratch_subdirectory> $SCRATCH The environment variable $SCRATCH_LEGACY will remain defined and point to the legacy scratch area until end of March, 2013. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/aktuell/ali4501/ Reinhold Bader

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Upd:Linux Cluster: MPP Cluster and UV unavailable
by LRZ aktuell Feb. 5, 2013

Feb. 5, 2013

Changes to this message: MPP and UV unavailable Dear users of the Linux Cluster systems at LRZ, unfortunately both the MPP cluster and the Ultraviolet systems are presently unavailable for user operation. * On the UV, a defective NUMAlink component needs replacement. * On the MPP cluster, we are observing failures in MPI message transmission which need further investigation. We'll keep you updated about the status of the above systems, and of course are working toward a speedy return to user operation. Apologies for the disruption of services. ----------------------------------------------------------------------- Recent configuration changes: * The default MPI environment on the MPP cluster will be changed from Parastation MPI to Intel MPI. However, the mpi.parastation module will remain available for legacy use until the end of 2013. On the sgi ICE and UV systems, the sgi MPI (mpi.mpt) will remain default. * The 8-way Myrinet Cluster will be retired from parallel processing, and the nodes will be added to the serial processing pool. This implies that the partition "myri_std" in the SLURM cell "myri" will become unavailable. * For the serial queues, SLURM fair share scheduling will be introduced. For the parallel queues, a combination of fair share scheduling and favoring large jobs will be activated. This is to prevent a single user from monopolizing cluster segments for long times if there are many jobs in the queue. * New storage systems will be introduced for the WORK (==PROJECT) and SCRATCH file systems. Please note that LRZ will only migrate WORK data to the new file system; data in SCRATCH will not be migrated. However the old SCRATCH file system will remain available as a separate mount in read-only mode on the login nodes until the end of March, 2013. Migration of data can then be done via commands like cd $SCRATCH_LEGACY cp -a my_scratch_subdirectory $SCRATCH The environment variable $SCRATCH_LEGACY will remain defined and point to the legacy scratch area until end of March, 2013. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/aktuell/ali4501/ Reinhold Bader

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Upd:SuperMUC: scheduled maintenance Jan 28 31
by LRZ aktuell Feb. 4, 2013

Feb. 4, 2013

Changes to this message: Returned to user operation Update (Feb 4, 2013, 21:40) Although the afternoon has become rather late, we are now returning the system to user operation and holding thumbs that the updates will keep the promised stability improvements. Update (Feb 4, 2013, 14:40) Dear users of the SuperMUC system, IBM and LRZ have worked hard over the weekend to resolve all system stability issues caused by some of the maintenance activities last week. So far, we believe that almost all problems reported by users of the system in the last weeks should be resolved now. We ve also been able to clearly pinpoint one previously unknown problem with processing LoadLeveler job STDIN and STDOUT files in GPFS during our intensive test and debugging activities over the weekend. Therefore we recommend to forego using GPFS for these IO streams, and instead write them to your HOME directory. Please also place LoadLeveler output and error files inside your HOME directory. We expect the system to go online again this afternoon. We regret any inconvenience the extended maintenance activities may have caused, and hope for your understanding. ----------------------------------------------------------------------- Dear users of the SuperMUC petascale system at LRZ, Due to a combined hard- and software maintenance, SuperMUC will be unavailable for user operation between January 28, 8:00 and the afternoon of January 31. Jobs still running at the beginning of the maintenance will be cancelled. The following changes are introduced by this maintenance: * Access to the PRACE network will become available to PRACE users, * LoadLeveler mail notification will be activated, * Licence servers will be accessible from the compute nodes, * The Infiniband software stack will be updated to a newer release, * Some presently missing packages will become available on the compute nodes (e.g., you can remove the workaround for a missing libnuma.so) * Intel MPI: The newest 4.1 bug fix release is now used by default. * Intel MKL: The 11.0 release is now used by default. The old mkl/ 10.3 module is however still available if you see trouble with the new version. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/supermuc/aktuell/ali4502/ Reinhold Bader

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Upd:SuperMUC: scheduled maintenance Jan 28 31
by LRZ aktuell Feb. 4, 2013

Feb. 4, 2013

Changes to this message: Returned to user operation Update (Feb 4, 2013, 21:40) Although the afternoon has become rather late, we are now returning the system to user operation and holding thumbs that the updates will keep the promised stability improvements. Update (Feb 4, 2013, 14:40) Dear users of the SuperMUC system, IBM and LRZ have worked hard over the weekend to resolve all system stability issues caused by some of the maintenance activities last week. So far, we believe that almost all problems reported by users of the system in the last weeks should be resolved now. We ve also been able to clearly pinpoint one previously unknown problem with processing LoadLeveler job STDIN and STDOUT files in GPFS during our intensive test and debugging activities over the weekend. Therefore we recommend to forego using GPFS for these IO streams, and instead write them to your HOME directory. Please also place LoadLeveler output and error files inside your HOME directory. We expect the system to go online again this afternoon. We regret any inconvenience the extended maintenance activities may have caused, and hope for your understanding. ----------------------------------------------------------------------- Dear users of the SuperMUC petascale system at LRZ, Due to a combined hard- and software maintenance, SuperMUC will be unavailable for user operation between January 28, 8:00 and the afternoon of January 31. Jobs still running at the beginning of the maintenance will be cancelled. The following changes are introduced by this maintenance: * Access to the PRACE network will become available to PRACE users, * LoadLeveler mail notification will be activated, * Licence servers will be accessible from the compute nodes, * The Infiniband software stack will be updated to a newer release, * Some presently missing packages will become available on the compute nodes (e.g., you can remove the workaround for a missing libnuma.so) * Intel MPI: The newest 4.1 bug fix release is now used by default. * Intel MKL: The 11.0 release is now used by default. The old mkl/ 10.3 module is however still available if you see trouble with the new version. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/supermuc/aktuell/ali4502/ Reinhold Bader

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International Summer School on HPC Challenges in Computational Sciences
by LRZ aktuell Feb. 4, 2013

Feb. 4, 2013

Training available for students in U.S., Europe, and Japan at International Summer School on HPC Challenges in Computational Sciences Graduate students and postdoctoral scholars in the United States, Europe, and Japan are invited to apply for the fourth International Summer School on HPC Challenges in Computational Sciences, to be held June 23-28, 2013, in New York City. The summer school is sponsored by the U.S. National Science Foundation s Extreme Science and Engineering Discovery Environment (XSEDE) project, the European Union Seventh Framework Program s Partnership for Advanced Computing in Europe Implementation Phase project (PRACE-2IP), and RIKEN Advanced Institute for Computational Science (RIKEN AICS). Leading American, European and Japanese computational scientists and high-performance computing technologists will offer instruction on a variety of topics, including: Access to EU, U.S., and Japanese cyberinfrastructures HPC challenges by discipline (e.g., bioinformatics, computer science, chemistry, and physics) HPC programming proficiencies Performance analysis & profiling Algorithmic approaches & numerical libraries Data-intensive computing Scientific visualization The expense-paid summer school will benefit advanced scholars from European, U.S., and Japanese institutions who use HPC to conduct research. Further information may be found at http://www.prace-ri.eu/ Training-available-for-students-in?lang=en This information is also available on our web server http://www.lrz-muenchen.de/services/compute/aktuell/ali4518/ Alexander Block

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Oeffnungszeiten des LRZ-Gebaeudes am Faschingsdienstag
by LRZ aktuell Feb. 4, 2013

Feb. 4, 2013

Das LRZ-Gebaeude wird am Faschingsdienstag, den 12.02.2013, bereits um 12 Uhr geschlossen. Der Betrieb in den Nutzerraeumen und -anlaufstellen endet jeweils bereits eine Viertelstunde vorher. Dazu gehoeren die Raeume im Erdgeschoss (PC-/CAD-/Scannerbereiche), die Praesenzberatung und das Benutzersekretariat. Auch fuer Anlieferungen und Kurierdienste ist das Haus geschlossen. Diese Information finden Sie im WWW unter http://www.lrz-muenchen.de/aktuell/ali4517/ Ludger Palm

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Upd:SuperMUC: scheduled maintenance Jan 28 31
by LRZ aktuell Feb. 4, 2013

Feb. 4, 2013

Changes to this message: Update on Status Update (Feb 4, 2013, 14:40) Dear users of the SuperMUC system, IBM and LRZ have worked hard over the weekend to resolve all system stability issues caused by some of the maintenance activities last week. So far, we believe that almost all problems reported by users of the system in the last weeks should be resolved now. We ve also been able to clearly pinpoint one previously unknown problem with processing LoadLeveler job STDIN and STDOUT files in GPFS during our intensive test and debugging activities over the weekend. Therefore we recommend to forego using GPFS for these IO streams, and instead write them to your HOME directory. Please also place LoadLeveler output and error files inside your HOME directory. We expect the system to go online again this afternoon. We regret any inconvenience the extended maintenance activities may have caused, and hope for your understanding. ----------------------------------------------------------------------- Dear users of the SuperMUC petascale system at LRZ, Due to a combined hard- and software maintenance, SuperMUC will be unavailable for user operation between January 28, 8:00 and the afternoon of January 31. Jobs still running at the beginning of the maintenance will be cancelled. The following changes are introduced by this maintenance: * Access to the PRACE network will become available to PRACE users, * LoadLeveler mail notification will be activated, * Licence servers will be accessible from the compute nodes, * The Infiniband software stack will be updated to a newer release, * Some presently missing packages will become available on the compute nodes (e.g., you can remove the workaround for a missing libnuma.so) * Intel MPI: The newest 4.1 bug fix release is now used by default. * Intel MKL: The 11.0 release is now used by default. The old mkl/ 10.3 module is however still available if you see trouble with the new version. This information is also available on our web server http://www.lrz-muenchen.de/services/compute/supermuc/aktuell/ali4502/ Reinhold Bader

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